rs50107973 SNP Detail

Summary

• ID
  rs50107973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39297651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAGAAG TTACATAATG
  GGATGGCCAT ATGTTTTATG ACAAGAGCTG AACAGCAGAA TTACTAATCA ATTATTATGA
  TATTGAATAC TTATTTTCCA AAGTGTGATT TATATAGGGG AAAGTGTTTT GTAAAGCTGT
  CACTCTTCAC TATAGTGCCC CGAAATGCCT TGGATCCGGA TTGTGTTCAT TTCAGCGTTG
  Y
  GAGGCCCTAA TCAGCTAAGT ACCATAATCC TCCTTCGAGT ACATTCTTAG TTGACCTGGA
  GCTATCTATA TACAGCCACA CAGTAACAGC AGTAAAAATA GCCATGCCTT AACAGGGCTG
  TCACTAAAAT ATTGTGTGGT TTCTCCTTGA ATGGATGCTA TGTTGTGTGC AACTCTCAGT
  AGTTGAGTTT TGTAGTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52544927	NES15622785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50107973					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52544927	NES15622785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39297651 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	42 bp upstream
Tssr131154	transcription start site region 131154	68 bp upstream
Tssr131155	transcription start site region 131155	96 bp upstream
Tssr131156	transcription start site region 131156	312 bp upstream