rs50108690 SNP Detail

Summary

• ID
  rs50108690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76372713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC AGTAGCAAAT AGTTATGAAG
  Y
  AGCAATGCAA ATAATTTTAT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147533111	ENSMUSSNP3037557	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss325699767	CHEV_18_76399296	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50108690					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76372713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	1195 bp proximal
Rr540992	regulatory region 540992	1448 bp proximal
Smad2	SMAD family member 2	1938 bp upstream
Tssr151989	transcription start site region 151989	1661 bp upstream
Tssr151990	transcription start site region 151990	1690 bp upstream
Tssr151991	transcription start site region 151991	1778 bp upstream