rs50109135 SNP Detail

Summary

• ID
  rs50109135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61503138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACTTCA ATCTACCCTC
  TAGAGAGCAT AATTCAAAAC CATAACACTG CACTTTGCAA TGGAACACCC CCATGTCTGT
  GCTTCTACAC TGCTTCCTCG GCAGTGAAAT ATGATGGAGA TATTTGGAGC TGAAAATCAG
  CTCTCATGTC TTCAATGACA TCTCTTATCC ATAAGAGAAT TTTATGGTGC AGAACTGTAT
  Y
  ATATGTGGAA TGGTTTGCAC ATTCTTCATG TGCACAGAAA CAGTAAACAC AGAATCAAAG
  AACTATACAG TGGTGGGTAC TGTAATGGCA GCCCTGATGG GGCACAGAGA AATTCTACAT
  TCAATGTGAG CTCTGAATAC AGTGTATTTT TCTGATATTT TCCCCTTGCT CAACCTGAAT
  TGATATGACA AGATAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61823445	NES17746662	PERLEGEN	MM_PANEL2	f	SNP	C		T		C		T	C	C	T		T
ss149102546	ENSMUSSNP1543410	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss324370734	CHEV_13_61456685	CHEVERUD	SCREENING_POP	f	SNP						T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50109135					SNP	C	C	T	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823445	NES17746662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61503138 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates