rs50109719 SNP Detail

Summary

• ID
  rs50109719
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139899119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATAAGGA AGACATTGGA AGAAGTCTCA TTGTAAAACT
  TTCCAAGCAG GGTGTAGAGA AGGCCTTCAC TCCATTAATA GCTAACAGAC TCCTCTGGCA
  S
  ACACAAGTGC AGTCCTCAGT GTTGTTCAAA GCAAGAAAAG GAAAATGTTA TTTCCCTTTC
  TATCCCACCT CACCTGCAAA GCCTTACCTG CATGCACCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss147670433	ENSMUSSNP4675101	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs50109719					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139899119 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1179 bp downstream
Tssr20477	transcription start site region 20477	1152 bp downstream
Tssr20478	transcription start site region 20478	1136 bp downstream