rs50110188 SNP Detail

Summary

• ID
  rs50110188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32112834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT TCCACCTCTT GGCAACTCTA
  Y
  GGCCTGGGAA CCAAGCCTTT GACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
ss60383498	NES15883164	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	T		T			C
ss134744615	ENSMUSSNP4135541	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss320696673	CHEV_3_31957607	CHEVERUD	SCREENING_POP	f	SNP									T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
rs50110188					SNP	T	C	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60383498	NES15883164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32112834 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	within coordinates
Rr80380	regulatory region 80380	968 bp proximal