rs50110575 SNP Detail

Summary

• ID
  rs50110575
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGACC CCTTCTAAAA
  GCAGAACTAG AGGCAAGGGG CAAGACAAAA TGTTTAAACT TTAAATTTTT CCTATCAAAA
  AAAATCACTT TTTCATCCTG ACTGCCCAGT GTAAACCCCG AGGCACCTGT GTTATGCCCA
  CTGTGGGAAA TCTCCTGTTG TCAAAGAACT CAAGGCACAC TACGGTAGCA GCAATGATAA
  T
  GGTTGCTGCT GTCCCGGCAG TTTGCCCTGG GTATGTCAGC CCAATTTGAG TGAACTTAGA
  GGAGTCAGCA GACACAAACT GTCTTCCTAA GAGAGACTGC CCACATCACC AAAGGGTCCT
  TAGCTAGATA GAGCAAGGTA TATAAAAGCC TTACTGGTCT AGCACAAAGG AGGAAGAACT
  AGCTCCTAAT ATCCTTCATG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144899172	ENSMUSSNP4521595	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50110575					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191170 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1159 bp downstream
Rr18062	regulatory region 18062	1370 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	1370 bp downstream