rs50110904 SNP Detail

Summary

• ID
  rs50110904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CTAGCCTCAA AGCCACATAA
  R
  CCGGCAGAGG ACCGCTAGCC TGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145361166	ENSMUSSNP4412920	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322745686	CHEV_8_86265592	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50110904					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468322 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	510 bp upstream
Cpgi20655	CpG island 20655	3 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1555 bp downstream
Rr666301	regulatory region 666301	433 bp distal
Rr666302	regulatory region 666302	324 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	523 bp proximal
Tssr2618	transcription start site region 2618	1580 bp upstream
Tssr2619	transcription start site region 2619	1292 bp downstream
Tssr2620	transcription start site region 2620	396 bp downstream
Tssr2621	transcription start site region 2621	862 bp upstream
Tssr78291	transcription start site region 78291	1337 bp downstream
Tssr78292	transcription start site region 78292	1315 bp downstream
Tssr78293	transcription start site region 78293	1174 bp downstream
Tssr78294	transcription start site region 78294	1119 bp downstream
Tssr78295	transcription start site region 78295	1073 bp downstream
Tssr78296	transcription start site region 78296	1054 bp downstream
Tssr78297	transcription start site region 78297	259 bp downstream
Tssr82049	transcription start site region 82049	1623 bp upstream
Tssr82050	transcription start site region 82050	1535 bp upstream
Tssr82051	transcription start site region 82051	1261 bp upstream
Tssr82052	transcription start site region 82052	503 bp upstream