rs50111175 SNP Detail

Summary

• ID
  rs50111175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26491867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTTTTCC TTAGCTACAC CTGTACCTGT GCATTCCTAA
  GATGTTCCAT GCACTCTCCT GGGGACAGTG CCACAGCAGG GGTTGTGATA CTTCTCTGGA
  Y
  GGTGGGATCT GCTTAGTGGG CTGCAGTCTT CATAGTCTTA AGGATATGTT TCACTGAATC
  ATCACTCAGA GAGTGCACTA GTGATCAAAG TATTGCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52328638	NES15372166	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	C	T	C	T		C	C	C	C		T
ss137438946	ENSMUSSNP4287878	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss323950896	CHEV_12_27126733	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50111175					SNP	C	C	C	T	C	C	C	C	T	C	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328638	NES15372166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26491867 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	755 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	878 bp downstream
Tssr112998	transcription start site region 112998	1873 bp upstream
Tssr112999	transcription start site region 112999	1920 bp upstream
Tssr115902	transcription start site region 115902	989 bp downstream
Tssr115903	transcription start site region 115903	1321 bp downstream
Tssr115904	transcription start site region 115904	1338 bp downstream
Tssr115905	transcription start site region 115905	1643 bp downstream
Tssr115906	transcription start site region 115906	1771 bp downstream
Tssr115907	transcription start site region 115907	1826 bp downstream
Tssr115908	transcription start site region 115908	1866 bp downstream
Tssr115909	transcription start site region 115909	1952 bp downstream