rs50112599 SNP Detail

Summary

• ID
  rs50112599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCATCTC TGAGTAATGA
  CCCCAGCTCC ATGCTTTTAT TTCTAACCAA TAAAGTGAAA ACGTTCTGAT TTTCTCTACA
  TAGATTTTAG CTAAAAATAG CACAGGGTTC AGGTAGGAAT TTCCTGTGCT CATGGTCAAT
  GAATGGCACA TTACGGTTTA TACTATCCCT TGAGAATGAA TTTATTTCAA AAGAAAAAGG
  Y
  CTGGAGATGT GGCTCAGTGG CACCGTGCTT GAGCAGAGTG TGTGAAGCCA TGCCTCCATC
  CTCACACTGG AGAAATGACA CAGCAACAAT TTAAATCTAT ATGAAAAAAA TTTCTTTCAG
  TTTTCCATTG TAAGCCACTA AAGGCTAAAA CATATGTCTT AACCAGTCCT GTTCAATAAC
  AGACAAGGAA AAGTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435746	NES15935083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50112599					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435746	NES15935083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698682 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1090 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			533 bp distal
Rr583801	regulatory region 583801			892 bp distal
Rr583802	regulatory region 583802			651 bp distal
Rr583803	regulatory region 583803			935 bp proximal
Tssr31391	transcription start site region 31391			1427 bp downstream
Tssr31392	transcription start site region 31392			1345 bp downstream
Tssr31393	transcription start site region 31393			1318 bp downstream
Tssr31394	transcription start site region 31394			1281 bp downstream
Tssr31395	transcription start site region 31395			635 bp downstream
Tssr31396	transcription start site region 31396			1340 bp upstream