rs50113032 SNP Detail

Summary

• ID
  rs50113032
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTTAT TTTTTGTGGG
  CCTGGGTCAT GATGATCATT AAAATGAGGA GAGACCTGAA GCTTGTGCCG ACCACCTGCA
  GCACCTACTA AGTCCGAAGA CCCATGGGCA TCGCTATCGA GGAACGCTGA AGTCTGGGTT
  TCCCAGCTCA CATTCAAGTG GGCTAAATAA CCTGGGCCTT TATGTGTAAT TCTGCATCCC
  K
  AAGGGAACAT TGTACCTGAG ATGACATGAC TCTCAGCATC TCATGCCAGA TTTAAAACTG
  TAAACTGGAA TGGATAGCAG ATGAAGACAA TTATCTCAGG CAAAAAAAAA AAAAAAAAAA
  AAAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAAAAGAGA AAAGAAAGAA TAAATGGAGA
  TTGTGTCTTT GGGAATGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435755	NES15935123	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	G	G	T	T	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50113032					SNP	T	G	T	G	T	G	G	T	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435755	NES15935123	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697026 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			712 bp proximal
Rr583801	regulatory region 583801			743 bp proximal
Rr583802	regulatory region 583802			984 bp proximal
Tssr31391	transcription start site region 31391			200 bp upstream
Tssr31392	transcription start site region 31392			286 bp upstream
Tssr31393	transcription start site region 31393			320 bp upstream
Tssr31394	transcription start site region 31394			342 bp upstream
Tssr31395	transcription start site region 31395			987 bp upstream