rs50113558 SNP Detail

Summary

• ID
  rs50113558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51632895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTAACCA ATCTATACAA
  TGATATTCTT GCATAAGTGA TCTGCAAAGC TCTTCCAGAT TTTAAAAGTA TGTATTTATA
  GGATAAAAGA AATGATTGCT CAATATATAA GCACAAAAAT TATGGTATAT CCATAGAAAT
  GGATTAATCA TCTCTCAGCA ATAGATATAA AAAAAGAATG AACCTTAGCT ACACACAACA
  R
  TGCGGATGAA TCTATAAATA TTTGTGCTGA GTGAAATAAA CCAGACAAGA AAAAAAAAAA
  AAGGAGAAAA AAAGCTTTCA TTTACATAAA ACCCTAGAAG GAGGACCCTA GCAAAGATAA
  AGAGATTTTT CCCCCTGGGG CATTGTGAAA CTTTCAGGAC GAGAGATGTG ATTGAGCTGA
  TAATTTCCCT GAGTAAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149111914	ENSMUSSNP3708171	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50113558					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51632895 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	262 bp upstream
Rr410724	regulatory region 410724	70 bp proximal
Tssr6634	transcription start site region 6634	257 bp upstream
Tssr6635	transcription start site region 6635	434 bp upstream
Tssr6636	transcription start site region 6636	512 bp upstream