rs50114166 SNP Detail

Summary

• ID
  rs50114166
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24034683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA AGGTCTCCTC AGAGGCCAGG
  C
  TGGTCCAGGA GCAGAAATAC CCAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145333358	ENSMUSSNP615702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325327507	CHEV_17_23952676	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50114166					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24034683 () rs orientation: forward

Symbol	Name	Function Class
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	518 bp downstream
Tssr142966	transcription start site region 142966	471 bp downstream
Tssr142967	transcription start site region 142967	425 bp downstream
Tssr142968	transcription start site region 142968	404 bp downstream
Tssr142969	transcription start site region 142969	346 bp upstream
Tssr142970	transcription start site region 142970	375 bp upstream
Tssr142971	transcription start site region 142971	443 bp upstream
Tssr142972	transcription start site region 142972	488 bp upstream
Tssr142973	transcription start site region 142973	502 bp upstream
Tssr142974	transcription start site region 142974	539 bp upstream
Tssr142975	transcription start site region 142975	563 bp upstream
Tssr142976	transcription start site region 142976	591 bp upstream
Tssr142977	transcription start site region 142977	649 bp upstream
Tssr142978	transcription start site region 142978	694 bp upstream
Tssr146670	transcription start site region 146670	439 bp upstream