rs50114574 SNP Detail

Summary

• ID
  rs50114574
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32689284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA CAGATAGTTA ACCCTTGAGT
  A
  AATTCTCCAC CCTGTTTTGG TACTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147954667	ENSMUSSNP5247722	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325137919	CHEV_16_32869000	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50114574					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32689284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	503 bp distal
Rr323396	regulatory region 323396	1422 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140827	transcription start site region 140827	1397 bp upstream
Tssr140828	transcription start site region 140828	634 bp upstream
Tssr140829	transcription start site region 140829	596 bp upstream
Tssr140830	transcription start site region 140830	546 bp upstream
Tssr140831	transcription start site region 140831	1044 bp downstream