rs50115720 SNP Detail

Summary

• ID
  rs50115720
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATTAAAT GTCTTCCAGA TTCAAGGTTA CTAAATCCTA
  ACCTAGGAAC GTGTGATCTC AAGAAACACA CAATGGAGGC ATTTAAGCAG AATCAATTTT
  A
  TGCAATATAT TTGATTTTGA AATAGACCAT GACCTTTGAA GGTAATATTT TTAACATTTT
  ATGGATTATT ATTACTATTA TTATTATTAA AAATTTTTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809900	ENSMUSSNP657669	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320711426	CHEV_3_37537210	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50115720					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1393 bp proximal
Gm42922	predicted gene 42922	1817 bp downstream
Rr575523	regulatory region 575523	1169 bp proximal
Rr575524	regulatory region 575524	1803 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1659 bp upstream
Tssr28908	transcription start site region 28908	1376 bp upstream
Tssr28909	transcription start site region 28909	1617 bp upstream
Tssr28910	transcription start site region 28910	1640 bp upstream
Tssr28911	transcription start site region 28911	1657 bp upstream
Tssr28912	transcription start site region 28912	1697 bp upstream