rs50115722 SNP Detail

Summary

• ID
  rs50115722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122343034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCAGGC CCCTGCAGCC
  CTGGGAAGTG AGACAGTGAA CAATAAACAC GATCGTTTCC GAAATTGGTA GACACCGAGG
  AGCAGCGGTG GAAATGGGGG ACACCTACAT TCTACATTAT CCCTCTTAGC ACAAGTAGAA
  GCTGGGGAGA CCTACAGAGT GGCCTAGCGT GGTAGGTAGG AGCCTAGAGA CCACCAAAAG
  R
  ACTCAGTGGC ACAGCGAGCA GCATGCCAGC TATGGACAGT GAGATTGTCA CAGGTAGAAA
  AAAGTAGTAA TGGCAAGGTT GGAGCGGGAG CTACGGCAGT GAAGGTCTAG TTTGGTATTA
  TCAGAAAAAT AGGTAAGGTG TGTGGGGGGT GTTAATCCTA CCTCTTTATA TTTGGAGACA
  GCTGCTTCCT TTTTCGACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52524587	NES15585934	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50115722					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524587	NES15585934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122343034 () rs orientation: forward

Symbol	Name	Function Class
A330035P11Rik	RIKEN cDNA A330035P11 gene	within coordinates
Cpgi6887	CpG island 6887	122 bp distal
Cpgi6888	CpG island 6888	1124 bp proximal
Gm56752	predicted gene, 56752	within coordinates
Rr296792	regulatory region 296792	within coordinates
Rr404313	regulatory region 404313	531 bp downstream
Tm9sf2	transmembrane 9 superfamily member 2	1416 bp upstream
Tssr127313	transcription start site region 127313	592 bp downstream
Tssr127314	transcription start site region 127314	479 bp downstream
Tssr127315	transcription start site region 127315	1407 bp upstream
Tssr127316	transcription start site region 127316	1443 bp upstream
Tssr127317	transcription start site region 127317	1454 bp upstream
Tssr127318	transcription start site region 127318	1497 bp upstream
Tssr130316	transcription start site region 130316	212 bp downstream
Tssr130317	transcription start site region 130317	1294 bp downstream
Tssr130318	transcription start site region 130318	1318 bp downstream