rs50115942 SNP Detail

Summary

• ID
  rs50115942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29267372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGACACA CACACAAGAT
  AAATCTTAAT AATCTCAATA AGCGTTCTTA GCTATGTAGG GAATGTAAGG CCAGCCTACA
  GGGCAGGGAA GAGTGCTGTA TGGCAATTCA TGCCTACAAA ACACAGGGCA TGACAACATG
  CACACAAAGG GTCTACCTTA ATGGCTGCCC ATGAGGCAGG GGATCACAGG GACCTCCTGG
  R
  AGAGACAAAA AAATATGCAA AACAGGAGGT GAAAATAGAA ACCACTGCCT GGTGATAGAA
  TTAAGTCACC CACTTAGTAT TAAAAAGTTA ATAATAAAAT TTGGGGGCTG GAGAAATGGC
  TCAGTGGTTA AGAGTACTGA CTGCTCTTCC AGAGGCCCTG AGTTCAATTC CCAGCAACCA
  CATGGTGGCT CACAACCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559280	NES16575646	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50115942					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559280	NES16575646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29267372 () rs orientation: forward

Symbol	Name	Function Class
Rr524769	regulatory region 524769	1738 bp distal
Rr524771	regulatory region 524771	1236 bp distal
Rr524772	regulatory region 524772	1299 bp distal
Rr524773	regulatory region 524773	within coordinates
Rr524774	regulatory region 524774	201 bp distal
Rr524775	regulatory region 524775	201 bp proximal
Rr524776	regulatory region 524776	940 bp proximal
Rr524777	regulatory region 524777	1119 bp proximal
Tssr143492	transcription start site region 143492	1180 bp downstream