rs50116820 SNP Detail

Summary

• ID
  rs50116820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58894790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGGTGAGGG GCAAGCATCA GGTACCTCCT GAAGGCCTGA
  CCCGGGTTGG GGGCCAGCTT CAGGTACCTC CTGAAGGTCT GACCCAGGTG AGGGGCCAGC
  M
  TCAGGTACCT CCTGAAGGCC TGGCCCAGGT GAGGGGCCGC CTCAGGTACC TCTTGAAGGC
  CTGGCCCAGG TGAGGAGCCA GCCTCAGGTA CCTCCTGAAG G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132221407	ENSMUSSNP3810410	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50116820					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58894790 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1044 bp distal
Tssr101782	transcription start site region 101782	1014 bp downstream
Tssr101783	transcription start site region 101783	995 bp downstream
Tssr101784	transcription start site region 101784	983 bp downstream
Tssr108189	transcription start site region 108189	1771 bp upstream
Tssr108190	transcription start site region 108190	1733 bp upstream
Tssr108191	transcription start site region 108191	1598 bp upstream
Tssr108192	transcription start site region 108192	1579 bp upstream
Tssr108193	transcription start site region 108193	1563 bp upstream
Tssr108194	transcription start site region 108194	1515 bp upstream