rs50117697 SNP Detail

Summary

• ID
  rs50117697
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15727934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTCTTCAGA GACTTGAAGT TCTTATCATA CAGATCTTTC
  ACTTGCTTGG TTAGAGTCAC ACCAAGTTAT TTTATATAAT TTGTGATGTT GTGAAGGGTG
  T
  TCTTTCCCTG CTTTCTTTCT CGGCATGTTT ATCCTTTGAG CTTTAGTAAA GTTTCTCTTA
  TGAATGTGGA ATATGTATCA TAGACATTCA GAATTGATAG T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147936602	ENSMUSSNP6943757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50117697					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15727934 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	1520 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	151 bp distal
Rr607455	regulatory region 607455	264 bp distal