rs50117963 SNP Detail

Summary

• ID
  rs50117963
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153794285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCGGAGGG GAATGTCTCC ATGTCACTGG
  AATATATAAT TGGTGCTCTG CAGTTTTAAG TGGTGCCCCT TTGGTTAAGT GAAAACAAGA
  GTCATGGCTG GAGGCCTTTG CAGACAATAA TGACACTGGG AATGGCTTTG CCTCTTCATT
  K
  GGGCAGGTTT CTCACCTGGC TCCCTGGGGC TCAGGATGGG TGTGGATACC AGATTCTGGT
  GAGGGGACAT AAGAGGgtca aggatgacat accctgaacc ctggtgtgat gggcctgcct
  gcacagtctt gccttggcct ggctactcct                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148011216	ENSMUSSNP948030	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss320566734	CHEV_2_153778101	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50117963					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153794285 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	499 bp proximal
Rr567760	regulatory region 567760	707 bp proximal
Rr567761	regulatory region 567761	1631 bp proximal