rs50118168 SNP Detail

Summary

• ID
  rs50118168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46501588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTCTGCAGG AGAAAGTGAG CCAGCTGAAG GAGGAGGTGC GGCTGCAGTA
  Y
  GAAAAGCTGC ACCAGCTGCT GGATGAAGAC TTGCGGCAGA CAGTGGAGGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312539	NES15816175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs50118168					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312539	NES15816175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46501588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1864 bp proximal
Rr358472	regulatory region 358472	1988 bp distal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156775	transcription start site region 156775	1991 bp downstream
Tssr156776	transcription start site region 156776	1467 bp upstream