rs50118181 SNP Detail

Summary

• ID
  rs50118181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCAAAT GGGCAGGGGG
  AAATAGAGAA AGCCTATTTG CACTGAATGC ATTTAGCCAC CAACCATTTA TTTAATCACC
  CATAAATCAC CTGACAACAA GGAGCCTATC AAAATGGGGG AGGGGGGAAT GCATATTTCT
  ATTTCCATTC CTGTGATAAG AAAAGAAAGT AATGGGGTTT CCAAGGCTCC TCCTCTCCAG
  Y
  GCCCCCACAC TGAAGTCACA GTGTGGCTGC CACACCCACA TTTTATATGG TGCTGGGGTT
  CAGAACTCAG CCATTCATCC TTGTGCAGCC AGGGCCTTCC ACTGAGCCTC CTCAGTCCCT
  TCTTATCTTT GTCCCTTTGA GACAAGGTTT TACCTTGTAG CCCAGGCAAG TCCCCAACTC
  ACAGCAACCT CCATGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862677	ENSMUSSNP1018780	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320953866	CHEV_3_127112704	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50118181					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203435 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	871 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	830 bp distal
Rr584774	regulatory region 584774	237 bp distal
Tssr35571	transcription start site region 35571	899 bp upstream
Tssr35572	transcription start site region 35572	805 bp upstream
Tssr35573	transcription start site region 35573	778 bp upstream
Tssr35574	transcription start site region 35574	743 bp upstream
Tssr35575	transcription start site region 35575	722 bp upstream