rs50118517 SNP Detail

Summary

• ID
  rs50118517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164270615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATATTAT GTATGGCTAT TCTTGTCATA ATGGCTATTT
  CATTAACTCA TTTCTCCTTC ATGATTTCTC CTTGCTTATC ATGCGTCCCT TTCTCATCGT
  Y
  GTGAAGTAAG GTGAAAACCT TGTGTAAATT CTAACGAGAA TTCCGTGACA TTGCCTTTAA
  ACTACTAAAG CAACGGAGCC AAACGACAAC CCGTCCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978740	ENSMUSSNP6429509	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50118517					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164270615 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13722	regulatory region 13722	586 bp proximal
Rr25449	regulatory region 25449	521 bp proximal
Rr25450	regulatory region 25450	1765 bp proximal
Rr31656	regulatory region 31656	816 bp distal
Tssr9785	transcription start site region 9785	180 bp upstream
Tssr9786	transcription start site region 9786	218 bp upstream
Tssr14743	transcription start site region 14743	1470 bp upstream
Tssr14744	transcription start site region 14744	1428 bp upstream