rs50119937 SNP Detail

Summary

• ID
  rs50119937
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTCTATT TTATTTTTTC CTATGCCAAT GACTGTGGCT
  TCAAATCTGC AATTGAGAGA TGAGATGGAT GTATTTACGT GTCTCTTTGT GTGAGCATTT
  W
  TGCACGTATA TGTTTCTGTT TGTTATAGTG ATTTAGCCTT ACTTGCAGAA TAATATTTCT
  GAAGTGTTGT TTCAGGTATG GTTAATTTTT TTTTTAAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60261858	NES15764133	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T	T	A	A		A	T	A	A
ss145758494	ENSMUSSNP2616169	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					T
ss325417408	CHEV_17_52040707	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs50119937					SNP	A	A	T	T	T	A	T	T	A	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261858	NES15764133	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208410 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1591 bp proximal
Rr342130	regulatory region 342130	1611 bp distal
Tssr148689	transcription start site region 148689	1755 bp upstream