rs50120517 SNP Detail

Summary

• ID
  rs50120517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156058030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGT TATAACCAGC ACTGTCTATG
  S
  AAACAGGAAG CCTGTGTCTA ACAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60330227	NES15828193	PERLEGEN	MM_PANEL2	f	SNP	C		G	G		G	G	G	C
ss145791144	ENSMUSSNP2553264	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs50120517					SNP	C	C	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330227	NES15828193	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156058030 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	1106 bp distal
Rr421147	regulatory region 421147	570 bp distal
Rr421148	regulatory region 421148	820 bp distal
Rr421149	regulatory region 421149	700 bp distal
Rr421150	regulatory region 421150	177 bp proximal