rs50122078 SNP Detail

Summary

• ID
  rs50122078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123651652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTCTTAA GGGAGAAACC AAATGCTTTT GTACCTAGAT
  TATATGTTTT ATTGAAATGC TGTTCTTTTG GGAACGCCAT CTAGTTTTTA GCTGTGCAAA
  R
  TGTCAGATGG TGCTAATGTT TAAATAGCTT ACTTCAAATA GTCTCTCAAG GTGAAGCAGA
  GTGTGCATGT GGAAGTCAGT TAATGGGAAC CAGGTCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60834160	NES16018743	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G		G	G	G	G		G
ss149195353	ENSMUSSNP3249034	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321670968	CHEV_5_123963598	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50122078					SNP	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834160	NES16018743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123651652 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	1707 bp downstream
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	within coordinates
Rr620216	regulatory region 620216	1162 bp distal