rs50123076 SNP Detail

Summary

• ID
  rs50123076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGGAAT CGTTGTGCAT
  GCTTTTAACC CCAGCATTAA GGAGGCAGAG GGAGGCAGGT GAGTTAAAGG CCTATATAAC
  CTATATAGGG AGTTCCAGGC TAACTGGGGC TATGTAGTGG GACCCGGTCA TTGCTCTGTA
  AAAGTAAAAA TAGATACTGT TCCCTTAGTG CAAGAACAGA TTTTATTAAT TTTAACCCAT
  R
  TGTCACTTAA AATCATTCCT AACTAGGGAT TAATCCACTC TTATATGAGT CTTCATTTCC
  CAGCTAGCCT TGATCTGTAC ACGTGCCCCT TTTCTTCCTC TGAGTACAGT AACTGCGGCT
  AGGTCCAATA CAAAACCAAA CAAAAACAAA ACAAAGACAA CAAATAAAAA ACAACACTAG
  CCAAAATAGC AAGACCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716373	ENSMUSSNP3836032	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323830206	CHEV_11_99853545	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50123076					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1310 bp proximal
Krtap17-1	keratin associated protein 17-1	1003 bp downstream
Tssr110721	transcription start site region 110721	1761 bp downstream