rs50123087 SNP Detail

Summary

• ID
  rs50123087
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143610808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGATGTG GATATTCTAA
  ACATACAGGG TGATTTAATT CACCTTCCTG GAACATTTGA CAATGAAGAG ATTTATTGAT
  TTTTTTTTTT CTACTGAAAT GCCAGACAGT GTGCTATATG ATAGGAAACA GCTTTTTAAT
  TTTTATTGAT TTAGCTTATC AAAAAAAATC TTTCCTCCTC ACATTATGGA AAGATACTTA
  S
  GGATGCTTTT GGCAGTCTTA GAGCTTCGAA CCCAGTGAAA ATCTCTCACA ACTTAAACAT
  GTGAGTTACT GTATACTTAC TGTGTGAACT TGGTGGCCTC TGTGTGACCC TTTATCTGTG
  GAGATTTGAA GTTCACATAG AGTTCTTGTA GTTATCCCAT TTCCATTTTC AAAACAGCTG
  CTTTGCTTAG AGAAAAGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852260	NES15998530	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50123087					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852260	NES15998530	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143610808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	1882 bp distal
Cyth3	cytohesin 3	within coordinates
Rr124733	regulatory region 124733	207 bp distal
Rr124734	regulatory region 124734	within coordinates