rs50123203 SNP Detail

Summary

• ID
  rs50123203
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58892067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT CATGGCAGGA GGTGCGGTGC
  T
  CATTGCCTCT TTGCTCCAGA GGGGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132221279	ENSMUSSNP5692804	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323695592	CHEV_11_58814743	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50123203					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58892067 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1669 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1179 bp proximal
Tssr101781	transcription start site region 101781	1871 bp downstream
Tssr101782	transcription start site region 101782	1679 bp upstream
Tssr101783	transcription start site region 101783	1716 bp upstream
Tssr101784	transcription start site region 101784	1733 bp upstream
Tssr108187	transcription start site region 108187	1960 bp upstream
Tssr108188	transcription start site region 108188	1834 bp upstream
Tssr108189	transcription start site region 108189	941 bp downstream
Tssr108190	transcription start site region 108190	957 bp downstream
Tssr108191	transcription start site region 108191	1114 bp downstream
Tssr108192	transcription start site region 108192	1133 bp downstream
Tssr108193	transcription start site region 108193	1150 bp downstream
Tssr108194	transcription start site region 108194	1180 bp downstream