rs50123790 SNP Detail

Summary

• ID
  rs50123790
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14302685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATCGGA GAAACAGGTA
  CACGACTGTA TCGACTAAGG AAAAGCAGTA CAGTGCCACA CACCTGTAAG CTCACCACTT
  AGGAGGCTAA GGCAGGATGA CACTGTGTTG GCAACACAGT GAGATCTTAT CTCAAACAAA
  AGTAAAGGGG GAATTTACAA TTAAAGCCTG TCACCCCATC ACAGGAAGCT TTGCTCACCT
  W
  TAGAATTCAT TATCCTCCTT GGTTTCAATA TCCCTCTTAT CAAAAATATA GTTGAGAGTT
  TAATATGCAC TGGGCCTACA GCATGATCCC CTATGGTTGA GAGGTCCTAT TATCCACATT
  TTATAGCCGA CGAAGCACAG CGACACTTCC CAAGAAGCAC TACTTGATAC ACAGGATAGT
  AAAGTCCAGC TGCCAGTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62078288	NES17151136	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	T	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50123790					SNP	T	A	A	A	A	A	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078288	NES17151136	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14302685 () rs orientation: forward

Symbol	Name	Function Class
Pdhb	pyruvate dehydrogenase (lipoamide) beta	within coordinates
Pxk	PX domain containing serine/threonine kinase	1971 bp downstream