rs50124597 SNP Detail

Summary

• ID
  rs50124597
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAAGAC TGATATGTTC ATTGCATTTC CGTCTGGTGT
  CTGAAATAAG TGTGTCTTTA AGGATTTGTA GCTTGTGTTC AAAATTTGTT TTCCACTGAA
  C
  CAATATTTCA CTATCTGGGT CTTTTTCAAA ATATTTGTCA AATTGTTCTT TGATGGTTTC
  ATATTTCTTG CTAAGTGGAT CCTCCAGTAA ATTAGATGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322371912	CHEV_7_113649719	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50124597					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss145614834	ENSMUSSNP6124855	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105412 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74127	transcription start site region 74127	1861 bp upstream
Tssr74128	transcription start site region 74128	1781 bp upstream
Tssr74129	transcription start site region 74129	1250 bp upstream
Tssr74130	transcription start site region 74130	1201 bp upstream
Tssr74131	transcription start site region 74131	990 bp upstream
Tssr74132	transcription start site region 74132	814 bp upstream
Tssr74133	transcription start site region 74133	157 bp upstream
Tssr74134	transcription start site region 74134	62 bp downstream
Tssr74135	transcription start site region 74135	145 bp downstream
Tssr74136	transcription start site region 74136	213 bp downstream
Tssr74137	transcription start site region 74137	279 bp downstream
Tssr74138	transcription start site region 74138	309 bp downstream
Tssr74139	transcription start site region 74139	343 bp downstream
Tssr74140	transcription start site region 74140	398 bp downstream
Tssr74141	transcription start site region 74141	798 bp downstream
Tssr74142	transcription start site region 74142	941 bp downstream