rs50124771 SNP Detail

Summary

• ID
  rs50124771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172197057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CATGCCGTTG TGGCTTCCCA
  Y
  AACGGGAAGC CTTGCCTTAT GATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009850	PARCsnp_1.19003	PARC_SEQ	INBRED	f	SNP		T	C
ss120013137	PARCsnp_1.08836	PARC_SEQ	INBRED	f	SNP		T	C
ss146189516	ENSMUSSNP6967729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320124585	CHEV_1_174299621	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs50124771					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172197057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	34 bp distal
Cpgi1046	CpG island 1046	294 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	501 bp distal
Tssr10190	transcription start site region 10190	983 bp upstream
Tssr10191	transcription start site region 10191	1194 bp upstream
Tssr10192	transcription start site region 10192	1374 bp upstream