rs50124843 SNP Detail

Summary

• ID
  rs50124843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138723693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTCCC CTAATGATGG
  AGTCCTGTAG GATACACAAA CCCTTTTCTC CTTAGTAAGT ATTTTCTTAT AACAACAGGG
  ATGCAAACTA GGACAGCATG TTATGCCCTA TGCCATTTGG GGAATTCTGC CAGCAATAAG
  CTCTTCCCCA ATGTCGTCCC TGAACTTCAC ATGGGAACAT AAACCAAAAT AAGTCTCATG
  Y
  CTTTGTGTTT ACCAATCTGT GGTACTGTGA AAACAGAACG TAAACCCAAG GACCAGCCTT
  ACAATGCTGA TATTTAAGCT AACGGCTTCC CCCTAGGACC CCATCTCCAC ATACCACACT
  GGAGACCAGT ATGTGTTCAG GATCAGAATT TGCAGGAGCT CCACAGCACA GAACTGGGGC
  CATTGGATCC TCCTGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60805897	NES16482642	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50124843					SNP	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805897	NES16482642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138723693 () rs orientation: forward

Symbol	Name	Function Class
Gm70139	predicted gene, 70139	1942 bp downstream