rs50125020 SNP Detail

Summary

• ID
  rs50125020
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAGGCTG GAGGGACTAC TCTGAGTTCT GCCCAGTCTC
  ATACCCTGGC CTGGAGGCTC TTTCAACATG GCCTCTACCA TTCTAGCACC GTCTTCGAAC
  C
  TTACTTCTAT TTGTCCGTCT TCCCTCACAA ACTCATTCCG CCTAAACTTC CTGTGTTCCT
  GTCCCCTTGA CATGCTCCGT TCCAGTATCT TCCCAGGGC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146937844	ENSMUSSNP5980931	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50125020					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353144 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	833 bp upstream
Cpgi9813	CpG island 9813	386 bp proximal
Rr370354	regulatory region 370354	701 bp upstream
Rr535610	regulatory region 535610	403 bp proximal
Rr535611	regulatory region 535611	826 bp proximal
Rr535612	regulatory region 535612	904 bp proximal
Rr535613	regulatory region 535613	1257 bp proximal
Rr535614	regulatory region 535614	1566 bp proximal
Tssr150444	transcription start site region 150444	799 bp upstream
Tssr150445	transcription start site region 150445	863 bp upstream
Tssr150446	transcription start site region 150446	887 bp upstream
Tssr150447	transcription start site region 150447	1017 bp upstream
Tssr152786	transcription start site region 152786	1542 bp downstream