rs50125032 SNP Detail

Summary

• ID
  rs50125032
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134127421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGACTCT GTCTCAAAAC
  AAAAGAAAAA TAGAGCTATC AGTTATTTAT TGAAATTACG TGTGTGCACG CATGTACAAA
  TCAGAGGAAC AACCTGCAGG GTTCCATTCT CTCCTTCCAA GGTCCAGAAG ATCGAACTCA
  GGTCAGCAAA CTTGGCAGCG TCTTTACCCA CTGAGCCATC TCGAAGGCCC AATCTTTAAC
  K
  ACATTAAAAG ACATAGTGAG AATTCTGGGT TTCACGCCCT TTAGTGGGTA TGAGGCAGCA
  CAATAAGCCC CCATCTGATA GAAGGGAACT GAGAATATGA GATTGACAGG CAGGATTTTC
  TCCCCGAAGA GTTCCCTGTT CGCCTCGTCA GGTAGACTTG ACCCACCACA ACGTCAAAGC
  ACTCTGCCAA AGGGCAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60846905	NES16014406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50125032					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846905	NES16014406	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134127421 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1166 bp upstream
Cpgi16713	CpG island 16713	538 bp proximal
Gm15627	predicted gene 15627	within coordinates
Rr621932	regulatory region 621932	84 bp proximal
Rr621933	regulatory region 621933	605 bp proximal
Tssr49079	transcription start site region 49079	1110 bp upstream
Tssr49080	transcription start site region 49080	1122 bp upstream
Tssr49081	transcription start site region 49081	1185 bp upstream