rs50125353 SNP Detail

Summary

• ID
  rs50125353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47987950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG TGGGTGTTAA TAGAATCTAG
  R
  CTACAAATAC TCCATACAGG AACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60607563	NES16308434	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	G		G	A	G	G		G
ss144805837	ENSMUSSNP4030773	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss322655775	CHEV_8_48620269	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50125353					SNP	G	G	A	A	A	G	A	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60607563	NES16308434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47987950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	661 bp distal
Gm63731	predicted gene, 63731	586 bp downstream
Rr186609	regulatory region 186609	within coordinates
Rr368533	regulatory region 368533	1112 bp downstream
Rr400846	regulatory region 400846	1224 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Trappc11	trafficking protein particle complex 11	1445 bp upstream
Tssr77336	transcription start site region 77336	1206 bp downstream
Tssr81236	transcription start site region 81236	1503 bp upstream
Tssr81237	transcription start site region 81237	1479 bp upstream
Tssr81238	transcription start site region 81238	1438 bp upstream