rs50125952 SNP Detail

Summary

• ID
  rs50125952
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106343022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATCTGAA CGTTCAGGCT TCACTGGGGT TTGCTAGAGG
  AAGAGCGGAA ATGGAGCCTC TGGCTCCAGG ATTCCCATCA CCTGTCCCAT GCTCCTCAAG
  G
  CCCCTCACCT CGTAGGCTGC CCAGGAGGTG ACTCCAACGC CCAGGCTGCC ATCTTCTTGT
  GGGGTTTGGT GGGCCCTATG GGTGGATGCA AGGCTGAGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136936756	ENSMUSSNP2039851	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323185280	CHEV_9_106368154	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50125952					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106343022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	within coordinates
Gpr62	G protein-coupled receptor 62	mRNA-UTR
Pcbp4	poly(rC) binding protein 4	1811 bp downstream
Rr686360	regulatory region 686360	690 bp distal
Rr686361	regulatory region 686361	105 bp proximal
Tssr91318	transcription start site region 91318	928 bp upstream
Tssr91319	transcription start site region 91319	901 bp upstream
Tssr91320	transcription start site region 91320	521 bp upstream
Tssr91321	transcription start site region 91321	142 bp downstream