rs50126013 SNP Detail

Summary

• ID
  rs50126013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58953704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTACG CGCGCGCGCA
  Y
  GCACGTGTAT GTGTCTGGAA AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52643924	NES15465378	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50126013					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643924	NES15465378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58953704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	410 bp proximal
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	679 bp upstream
Rr273001	regulatory region 273001	1704 bp distal
Rr273002	regulatory region 273002	297 bp proximal
Rr281494	regulatory region 281494	296 bp proximal
Tssr120082	transcription start site region 120082	674 bp upstream
Tssr120083	transcription start site region 120083	744 bp upstream
Tssr120084	transcription start site region 120084	1803 bp upstream
Tssr120085	transcription start site region 120085	1929 bp upstream
Tssr120086	transcription start site region 120086	1971 bp upstream
Tssr120087	transcription start site region 120087	1994 bp upstream