rs50126114 SNP Detail

Summary

• ID
  rs50126114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACCAGGC TCCTCTGGAG
  GCATCTCTGT GGATGATTCA TTACCCTGGG ATGGACCCTA TGTCTTTATA TCTTGTTTGT
  TTTAATTTTA ACTTGTTCCC TCCAGGGCTA GAGATTGAAC CCAAAGCCTC ACACATGCTA
  AGTAAGCAGC CCTACTGCCC AACTAATATT CTTAACCCTT AAAAAAAAAA ACAAACAAGC
  Y
  GGGCATGTTG GCTCACGCCT TTAATCCCAG CACTTGGGAG GCAGAGGCAG AGGCAGGCAG
  ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC AGAGTGAGTT CCAGGACAGC CAGGACGATT
  CAGAGAAACT CTGTCTTGAG AAAAACAAAA CAAAACAAAA CAAAACAAAA CACCCAAACA
  ACTGAGTGTG GATGAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148098506	ENSMUSSNP2374759	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50126114					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850919 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1763 bp upstream
Tssr45438	transcription start site region 45438	458 bp downstream
Tssr45439	transcription start site region 45439	451 bp downstream
Tssr45440	transcription start site region 45440	438 bp downstream
Tssr45441	transcription start site region 45441	421 bp downstream
Tssr45442	transcription start site region 45442	415 bp downstream