rs50126213 SNP Detail

Summary

• ID
  rs50126213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13131174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAGCTC TAGCTATTAT
  GGAACTCATT CAATAGACCA GGCTGGGAAT TGAACTCAGG ATCTCTGGAA AAGCAGTCTG
  TGATCTTAAT CACTGAGTCA TCTCTCCAGC CTGGTTTTTC TTTTAAACTC TAATAAGAGC
  ACCCTCAAGA TTTCTTTTCA GCCAATTCTT AATTTTTTTT TTCAGTAGTA GCAAGGCCAA
  R
  AACCCAGAGC GAAGTCCTCA GCTTCTCTGA TAACACATAG CAACTCCACC AAGGCTCCTC
  AAAATCTTCT GTGGCATTCT CACCATGAAG AACAAAAGTA ACTGCTGAGC TGTTGAGTCT
  CTTGGTCCCA GCTATCAAGG CAGATGTGTA CCTTCAAAAA GACATCAGTG AGCTGAGGGT
  GGTGCTTATC AGAAGAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60328620	NES15831486	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50126213					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60328620	NES15831486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13131174 () rs orientation: forward

Symbol	Name	Function Class
Gm5250	predicted gene 5250	1075 bp upstream
Gm37162	predicted gene, 37162	999 bp upstream
Rr370874	regulatory region 370874	355 bp downstream