rs50126249 SNP Detail

Summary

• ID
  rs50126249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125221124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCTTAT TAACAACACA
  TGTGTTTGTG GATCCTCTTT ACCTTTGTCA CACGAGTCAT CAGGTCAAGA TCTTGTATGG
  GTGGTAAACT GGGTGTCCTT AATTTTCAGC CTACCTTTAA ACTGGACCTC ACTATACTGC
  CTAACAAGGT CATGGTTGTG GGTCTCCCTG GGGAAGAACA AGAGTCCATG CATGCTTGCT
  M
  ACTCGTGTTC ATTCCCAATA TCCTGTTACT GTGATGGGAA AATGAAAATT TCTTTTAGAA
  AAATTGTAAA GACAAATGGC TGTGCATTCT CCTCATAAGA CAAAACCTGG TTAAAAAATT
  CTAGAGACTT GTGATAACTA AAGTTTTTTA CATACATATA CAATAAAAAC TCATCAAACA
  AAATGAATGC ACCAAAATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135808316	ENSMUSSNP395271	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320936356	CHEV_3_125130393	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50126249					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125221124 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	1277 bp distal