rs50126541 SNP Detail

Summary

• ID
  rs50126541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93255481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAAATTA CTTGTAAGTC
  AAGTAAGTCT TCAAGCTATC TTACCAATAT TAATTGTAGC TTGTCTGCTG ATAACTTCAT
  GTGAAAGTGG TGTCAACTTG GTAACATCCT GAAAAGAAAT ATATTGTAAA ATATAATCAA
  TACAAACCAC AAGTTTTCCC TTGACTTTAT ATTCCTCGGG TACAACTGTA TGCTCCGTAT
  R
  AACAGCTCTC TTCTCCTGCT AAAGCCCCCC CCCCCCCCCC CCCCCCCGCC GGCAACATGC
  TGTTAAGACT GGGAAGACTA TAATGACTAT AGTGTCATTG TCACACTAAG ACAAGTCCAC
  TCACTAAGAG AGGTCTGGCG ATGAAAGGCC ACCAAATACT GGAGTCATAA CAAGTCCTCA
  AATGTCTAAC ACAGTGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134247194	ENSMUSSNP6586480	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50126541					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93255481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	615 bp proximal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	within coordinates
Rr395367	regulatory region 395367	233 bp upstream
Rr692435	regulatory region 692435	766 bp proximal
Rr692436	regulatory region 692436	1353 bp proximal
Rr692437	regulatory region 692437	1879 bp proximal
Tssr163780	transcription start site region 163780	763 bp downstream
Tssr163781	transcription start site region 163781	810 bp downstream
Tssr163782	transcription start site region 163782	1030 bp downstream