rs50127359 SNP Detail

Summary

• ID
  rs50127359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34502885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA TGGAGTTTCT CTCCCTGAAG
  Y
  TCTGCACTGC CTGGAGAGGG AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62694710	NES17325746	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	C		C	C	C		T
ss325371903	CHEV_17_34420856	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50127359					SNP	C	T	C	T	T	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62694710	NES17325746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34502885 () rs orientation: forward

Symbol	Name	Function Class
H2-Aa	histocompatibility 2, class II antigen A, alpha	within coordinates
Rr206	regulatory region 206	within coordinates
Rr526122	regulatory region 526122	1936 bp proximal
Tssr143987	transcription start site region 143987	1145 bp downstream
Tssr147559	transcription start site region 147559	1015 bp upstream
Tssr147560	transcription start site region 147560	985 bp upstream
Tssr147561	transcription start site region 147561	901 bp upstream
Tssr147562	transcription start site region 147562	880 bp upstream
Tssr147563	transcription start site region 147563	723 bp upstream
Tssr147564	transcription start site region 147564	596 bp upstream
Tssr147565	transcription start site region 147565	188 bp upstream
Tssr147566	transcription start site region 147566	126 bp upstream
Tssr147567	transcription start site region 147567	523 bp downstream