rs50127495 SNP Detail

Summary

• ID
  rs50127495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT GGGAAACTGG TGACCTGCAG
  R
  CCCCAATTAG CAATACCACA GCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136837885	ENSMUSSNP2760282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323129392	CHEV_9_98326707	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50127495					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	595 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	1092 bp proximal
Rr685259	regulatory region 685259	1972 bp proximal
Tssr2984	transcription start site region 2984	1184 bp downstream
Tssr86646	transcription start site region 86646	1456 bp downstream
Tssr86647	transcription start site region 86647	1383 bp downstream
Tssr86648	transcription start site region 86648	1353 bp downstream
Tssr86649	transcription start site region 86649	1318 bp downstream
Tssr86650	transcription start site region 86650	958 bp downstream
Tssr86651	transcription start site region 86651	775 bp downstream