rs50129080 SNP Detail

Summary

• ID
  rs50129080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:110358083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGAAA TGGCAAGAAG
  TGAGGGTTGG ATTGAGAAGG GCCTCTGACC TCTCCACTAA GTGAGAGTCC CCTCTCCTAT
  TTCCTTCCTG CCTCCTTCCA AAAAGATACT GCCTTGGAAG ATGAGTTCAA TGACAACAGT
  TGATAACTGT GCCCCATCAC AACCACGTAC ATTCTTGCAG CTTCCCAATA GCCAAATGAA
  R
  TTGGAGCAAA TGAAATTGCA CATGGATGTA CCCATCGGGG TTGGGCTCAC CACCATCAGT
  TGATCTATGC ATTGTACCCA TATATGGTTT TCTGTGATGG TCTCTATTCA TGGTAAATAG
  AGGCTTCTTT GATGAGAGGT GGTAGCCAGA CTTATCTGTG GGTATAAGGG TAGGATTTAG
  AATGCATTAA GTAATTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss61312782	NES16918339	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs50129080					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61312782	NES16918339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:110358083 () rs orientation: forward

Symbol	Name	Function Class
D10Mit150	DNA segment, Chr 10, Massachusetts Institute of Technology 150	1009 bp proximal