rs50129336 SNP Detail

Summary

• ID
  rs50129336
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191312523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAATG TGTGGTGTGT
  GTGTGTGTGT TATAGCAAAT AAATAAAGTC TCAAAATATT TAAAATTATA GCTCTTAACA
  TCTATATATA ATGCAGACTA AGGGTTGAGG GTCATCTTTT TTTTTTTTTT TTTTCGAGAC
  AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAGCTCACT TTGTAGACCA GGCTGGCCTC
  A
  AACTCAGAAA TCCCCCTGCC TCTGCCTCCC GAGTGCTGGG ATTAAAGGTG TGCGCCACCA
  CACCCGGCTG AGGGTCATCT TTTAGTTAGG TGTTTTTAGT CTTTCCAGAA TCAATGTTAA
  AAATTTGATT TCCACATTGA GCTTGGTCAC TATTCTATTG TTGTGAAGAG ACCTCATGAC
  CAAGGCAACT CTTACAAAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146508252	ENSMUSSNP96747	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50129336					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191312523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr426190	regulatory region 426190			505 bp distal