rs50129352 SNP Detail

Summary

• ID
  rs50129352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTCGCC AAGGTTATTG GTATTTTAAT GATAAAAAAA
  AAATAAGGCA GTACCAGCAG TTAAGAGCAC TGACTGCTCT TCCAGATGCC CTGAGTTCAA
  W
  TCCCAGCAAC CACGTGGTGG CTCACAACCA TCTGTAATGG GACCTGATGC CCTCTTCTGG
  TGTGTCTGAA GGCAGTGACA GCGTACTCAA TACATAAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139575787	ENSMUSSNP458859	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50129352					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	950 bp proximal
Gm63342	predicted gene, 63342	470 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1770 bp upstream
Rr369830	regulatory region 369830	1401 bp upstream
Rr369831	regulatory region 369831	1620 bp upstream
Rr404108	regulatory region 404108	437 bp upstream
Rr492392	regulatory region 492392	1280 bp proximal
Rr492393	regulatory region 492393	1462 bp proximal
Rr492394	regulatory region 492394	1781 bp proximal
Tssr125743	transcription start site region 125743	1846 bp upstream