rs50130930 SNP Detail

Summary

• ID
  rs50130930
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91601745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGTACC AGGGTTTCTG
  AGGTAACACC GTGGTATGTA TTTCCTTGTG CTAGAAGTGA TAAACACTTC CTTGAAGAAA
  AAGCCCAACT GTACAACAGA GCTGACATGT CCTAAGAGGA TCCAAGGCTG TGGCCAAAAC
  CATCCTGAGC ACTGTTGATC CAGTTTAAAA GAATGCAGGA TACAAAGGGA ATCAAAAGAG
  S
  GAGTTGAAAT CTGGAGGTGA CGCTTCCAGA AGAATGGTTG GGAAAGAGCT CAGGCCTGGG
  CTTGAGACCA CACTCCTCTC TAGACCAGGT ACCTTCCTCA CCACAAGGAA CTTTACCTAT
  CTTGCTTCTG GAAACAGGAC CAGACTGGCA AACCAGGAGA AATAGATAGA GCGCTGTTGT
  ATCCTCTAAT TTCTCGGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52679065	NES15524185	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50130930					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679065	NES15524185	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91601745 () rs orientation: forward

Symbol	Name	Function Class
Rr277507	regulatory region 277507	945 bp distal
Rr277508	regulatory region 277508	within coordinates