rs50131114 SNP Detail

Summary

• ID
  rs50131114
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CTCATGTTCA GTAACAACTC
  T
  GCCGGCATCT GACCAGGTGT TTTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145462107	ENSMUSSNP1739071	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50131114					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515072 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	864 bp downstream
Rr12058	regulatory region 12058	329 bp proximal
Rr28453	regulatory region 28453	1528 bp proximal
Tssr195	transcription start site region 195	394 bp upstream
Tssr13461	transcription start site region 13461	1083 bp downstream
Tssr13462	transcription start site region 13462	1269 bp downstream
Tssr13463	transcription start site region 13463	1365 bp downstream
Tssr13464	transcription start site region 13464	1422 bp downstream
Tssr13465	transcription start site region 13465	1440 bp downstream
Tssr13466	transcription start site region 13466	1505 bp downstream
Tssr13467	transcription start site region 13467	1552 bp downstream
Tssr13468	transcription start site region 13468	1641 bp downstream
Tssr13469	transcription start site region 13469	1694 bp downstream
Tssr13470	transcription start site region 13470	1789 bp downstream
Tssr13471	transcription start site region 13471	1858 bp downstream
Tssr13472	transcription start site region 13472	1927 bp downstream
Tssr13473	transcription start site region 13473	1940 bp downstream
Tssr13474	transcription start site region 13474	1996 bp downstream