rs50131154 SNP Detail

Summary

• ID
  rs50131154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110433842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGAGCT GCTTGGTCTG
  CAGACGCCCC CTCTCTTAAC CTCCCCTGCA GGAGAGTCTC CCCTGTCGGC ACCCCTCCTT
  TTCACCCCAC TTCCCAGTAG GCGCCCACCT GCTGACTGCT TTGGTGAGCA CCGGGTAGAG
  CTTTAGGAGC AGCAAGTATT GGGCGAGCGC TCGCTTGGGA AGCGACCCGA GCTCGGATTC
  Y
  ACCCGCAGCC TGGACGCCGC AGGTGCCATC GCGGTCCGGA TGTCTAAGTC GCCCCGGGCG
  CCCACCCAAC AGCTAGGCAG TCGGGCACCC GGCCCGGGAC ACAGGGCACA GGGCGGGGAC
  GGCCTGACAT TTTCTGCCCT TCCTCCGCCC TCAGCGAGCC CGGCCGTCCC GCCACGCGCG
  CGGCCAGCTA GTGCACTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218622	NES16716935	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50131154					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218622	NES16716935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110433842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	within coordinates
Pole	polymerase (DNA directed), epsilon	343 bp upstream
Pxmp2	peroxisomal membrane protein 2	within coordinates
Rr399252	regulatory region 399252	1168 bp downstream
Rr616864	regulatory region 616864	within coordinates
Rr616865	regulatory region 616865	200 bp proximal
Rr616866	regulatory region 616866	376 bp proximal
Tssr47885	transcription start site region 47885	350 bp upstream
Tssr52499	transcription start site region 52499	34 bp downstream
Tssr52500	transcription start site region 52500	67 bp downstream
Tssr52501	transcription start site region 52501	170 bp downstream
Tssr52502	transcription start site region 52502	183 bp downstream