rs50131617 SNP Detail

Summary

• ID
  rs50131617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184270737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAATTTT TTTATTTTTT TTTTTTTTAC TTATTCGTGT
  CCCTTCTACA GCCTATTAAT CTTGGGGATA CTTAGGAGAA AAATCTCATC CTCACCAACC
  R
  CTGCAGACTC ACAATTTAGT CAGAAAACCA AGTCCAAATG ATAGAAGAAT TCATGTAAGC
  TAGATGCGGC TGTGAAGGCC CTAAACACTG AAGGCTGGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss60356048	NES15852329	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs50131617					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60356048	NES15852329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184270737 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425238	regulatory region 425238	1807 bp distal
Tssr10585	transcription start site region 10585	1770 bp downstream